A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
Not really a fix but a semantical correction. The function sample_has_umis returns false if a sample contains umis.
As this implementation was consistently confused the workflow ran correctly.
Still, to prevent any mistakes in the future it should be changed.
Not really a fix but a semantical correction. The function
sample_has_umisreturnsfalseif a sample contains umis. As this implementation was consistently confused the workflow ran correctly. Still, to prevent any mistakes in the future it should be changed.