A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
This adds an additional datavzrd report showing the gene mean gene coverages per sample group-wise.
While the annotation file previously was a gzip file we now directly output a plain gtf file.
This must be done for fusion calling anyway as zipped files are not supported.
This adds an additional datavzrd report showing the gene mean gene coverages per sample group-wise.
While the annotation file previously was a gzip file we now directly output a plain gtf file. This must be done for fusion calling anyway as zipped files are not supported.