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snakemake-workflows / dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
MIT License
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fix: update fastqc wrapper to `v1.10.0` to include memory parsing fix #272

Closed dlaehnemann closed 8 months ago

dlaehnemann commented 8 months ago

The memory parsing fix for the wrapper was introduced in snakemake-wrapper-utils here: https://github.com/snakemake/snakemake-wrapper-utils/pull/34

dlaehnemann commented 8 months ago

Without this fix, we (sometimes) get an OutOfHeapSpace error in the rule fastqc.

dlaehnemann commented 8 months ago

Without the second fix, the multiqc environment was broken, loading a multiqc version incompatible with python 3.12, but also python 3.12 at the same time.