search

snakemake-workflows / dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
MIT License
81 stars 36 forks source link

feat: add ScanITD candidate calling #283

Closed dawidkrzeciesa closed 8 hours ago

dawidkrzeciesa commented 4 months ago

Added a new variant caller, ScanITD, to improve the detection of internal tandem duplications.

johanneskoester commented 2 months ago

Thanks a lot! Unfortunately, in addition to my comments there are also by now some conflicts. Please contact @FelixMoelder in case you need help with resolving them.

FelixMoelder commented 2 months ago

Thanks a lot! Unfortunately, in addition to my comments there are also by now some conflicts. Please contact @FelixMoelder in case you need help with resolving them.

Should be resolved :)