A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
When stratification is enabled fusion and variant calling is mixed up as there is no differentiation when selecting groups during stratification.
This has been fixed by passing the calling_type.
When stratification is enabled fusion and variant calling is mixed up as there is no differentiation when selecting groups during stratification. This has been fixed by passing the calling_type.