A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
impr: column end position for non-coding variants has been moved to detail view
fix: correct processing of exons during fusion calling (became broken by previous PR)
fix: increased memory for fastqc as it failed with a OutOfMemory error on larger samples. @dawidkrzeciesa tested it for WES samples (~18GB fastqs) where 256MB were sufficient. Setting it to 1024MB should assure that also WGS data can be processed.
Changes:
end position
for non-coding variants has been moved to detail view