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snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
MIT License
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fix: Update to latest datavzrd wrapper #126

Closed fxwiegand closed 1 week ago

fxwiegand commented 1 week ago

A quick PR to update to the latest datavzrd wrapper. This should also fix ports of the CI failing.

Summary by CodeRabbit

coderabbitai[bot] commented 1 week ago

Walkthrough

The pull request updates the Snakemake rules in a bioinformatics workflow by changing the wrapper parameter for several reporting rules from version v4.7.2/utils/datavzrd to v5.0.1/utils/datavzrd. The affected rules include spia_datavzrd, diffexp_datavzrd, go_enrichment_datavzrd, meta_compare_datavzrd, and inputs_datavzrd. There are no changes to input/output structures or logging mechanisms, maintaining the original functionality of the rules.

Changes

File Path Change Summary
workflow/rules/datavzrd.smk Updated wrapper parameter from v4.7.2/utils/datavzrd to v5.0.1/utils/datavzrd for rules: spia_datavzrd, diffexp_datavzrd, go_enrichment_datavzrd, meta_compare_datavzrd, inputs_datavzrd.

Possibly related PRs

Suggested reviewers

🐰 In the meadow, the data flows,
With wrappers updated, the knowledge grows.
From v4.7.2 to v5.0.1, we hop with glee,
Each report shines bright, as bright as can be!
So let’s celebrate this change today,
For in our workflow, it’s a joyful play! 🌼

📜 Recent review details **Configuration used: CodeRabbit UI** **Review profile: CHILL**
📥 Commits Reviewing files that changed from the base of the PR and between 39d142262f30369b944f677d0d1608faf76cc4d6 and d57a0f1842f337672e074b78111b98972101eb7d.
📒 Files selected for processing (1) * `workflow/rules/datavzrd.smk` (5 hunks)
🚧 Files skipped from review as they are similar to previous changes (1) * workflow/rules/datavzrd.smk

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