The main point of this PR is to remove the schema-requirement of a sample.tsv sheet column named condition. Usually, it makes more sense to specify a more informative name for that column (e.g. something like group1_vs_group2), which will also be picked up in labeling etc. This also requires removing the condition column from the respective select(), but the custom-named column will be picked up through the formula, anyways.
As a side-effect, this PR future-proofs the column select() on a vector of strings with the all_of() function and fixes a bug that occurs, if the provided transcriptome does NOT contain any custom transcripts -- i.e. we now handle this case properly.
The main point of this PR is to remove the schema-requirement of a sample.tsv sheet column named
condition. Usually, it makes more sense to specify a more informative name for that column (e.g. something likegroup1_vs_group2), which will also be picked up in labeling etc. This also requires removing theconditioncolumn from the respectiveselect(), but the custom-named column will be picked up through the formula, anyways.As a side-effect, this PR future-proofs the column
select()on a vector of strings with theall_of()function and fixes a bug that occurs, if the provided transcriptome does NOT contain any custom transcripts -- i.e. we now handle this case properly.