I wonder if you guys had plans to add annotation to the transcriptome?

snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

MIT License

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I wonder if you guys had plans to add annotation to the transcriptome? #2

Open Buuntu opened 5 years ago

Buuntu commented 5 years ago

Do you guys have any plans to add an annotation pipeline to the transcriptome (like through Trinotate). I am struggling with that portion of the analysis and really like the snakemake workflows you guys make, they are very helpful in developing my own pipelines (working on a Trinity->Kallisto->Trinotate->Deseq2 pipeline with Snakemake).

johanneskoester commented 5 years ago

Thanks a lot for the suggestion! So, there are currently no concrete plans but it is definitely a good idea. We would be happy to see any contributions in this direction. I am keeping this open as a reminder for anybody interested.