Ihw fdr control - Githubissues

snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

MIT License

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Ihw fdr control #22

Closed AntonieV closed 4 years ago

AntonieV commented 4 years ago

Independent Hypothesis Weighting (IHW) for false discovery rate control: integration in workflow, implementation of script with an additional error handling for grouping before ihw calculation. Rule and reports added.

dlaehnemann commented 4 years ago

@johanneskoester Could you review and possibly merge this? When merging, could you also mention the important new side-effect of this PR in the commit message:

[] sleuth_init.R will now use "useast" instead of "www" as the default ensembl biomaRt mirror and cycle through all 4 available mirrors (up to three times) to find one that does not throw an error

AntonieV commented 4 years ago

@johanneskoester thanks :)