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snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
MIT License
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problem with creating new copy as a template #24

Closed dence closed 4 years ago

dence commented 4 years ago

Hi, I tried to create a new copy of this repository using the "Use this template" button and got this error. "We're sorry something went wrong. We were unable to clone snakemake-workflows/rna-seq-kallisto-sleuth's contents into dence/test_rnaseq_snakemake. The template you used includes files that are larger than 10 megabytes. Please ask snakemake-workflows to remove those files from the template and try again."

I was able to clone the repository and checked out the contents with du and saw that there is a 17M file "./rna-seq-kallisto-sleuth/.test/report.html", which is probably the cause of that error.

Thanks, Daniel

dlaehnemann commented 4 years ago

Thanks for the clear bug report, @dence!

The big file slipped through my code review earlier (and I wasn't aware of the file size limit for templates...) -- so my bad, sorry. The file is not really needed for testing and was only included for reference how a report should look. So we can simply fix this problem by removing it (see PR #25 ). We'll just have to wait for the CI to pass and someone else to give a quick approving "review" to get this into the master branch, and you should be good to go in trying out the workflow.

And please do report any further trouble you might have with the workflow or if you have suggestions for new tools or features. We're always keen on improving the workflows.