fix: Update sleuth conda environment and add multithreading to kallisto quant

snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

MIT License

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fix: Update sleuth conda environment and add multithreading to kallisto quant #68

Closed Austin-s-h closed 1 year ago

Austin-s-h commented 1 year ago

While encountering a few errors related to differential expression, I upgraded the environment for running Sleuth and increased the efficiency of the kallisto quant rule.

Also, found a bug in the samples schema, batch_effect was missing.