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snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
MIT License
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perf: improve spia script and report #83

Closed dlaehnemann closed 9 months ago

dlaehnemann commented 11 months ago

These changes come from implementing spia in a GFOLD-based workflow here: https://github.com/dlaehnemann/rna-seq-conservative-fold-change-without-replicates

This was modeled on the spia implementation here, and led to some cleanup of the spia.R script, to the removal of unnecessary report tables that didn't add any value and to some improvements of the spia reporting table.