snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
MIT License
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feat: Improve datavzrd tables #93

Closed Addimator closed 2 months ago

dlaehnemann commented 5 months ago

Just wanted to give you a heads-up that I am planning to merge another pull request tomorrow, which will change the datavzrd templates and update to the latest version of the datavzrd wrapper: #92

If you need me to look into updating this branch after the merge, let me know. All the changes are still fresh in my mind, so I should be reasonably confident in resolving conflicts that might arise.

dlaehnemann commented 4 months ago

So, I think I have reasonably resolved the conflicts with the latest main branch. Let's see if the tests pass -- if they don't, I'll try to resolve remaining issues.

Afterwards, I think we should still:

dlaehnemann commented 3 months ago

Just had a quick look, and apart from the things you list, I think you caught all of the other comments. I think all this weirdness in where this appear or don't really comes from this whole pending issue. I think I initially also had some review comments pending before I did the last round of reviews. And with some of your comments also pending and you applying fixes in the meantime, I think that a bunch of the references to lines and other comments just got jumbled.

So maybe you can go through this on Monday, until you are satisfied with the result. And then I will do a fresh round of review, that hopefully offers a less confusing experience for us both. Sorry for my part in causing the confusion here, but I think we're almost through... :sweat_smile: