snakemake-workflows / rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2
MIT License
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Gene2symbol #39

Closed jafors closed 3 years ago

jafors commented 3 years ago

This PR adds a script and a rule to add gene symbols to the ensembl ids via biomaRt. This happens after the deseq2 rules since the mapping between ensID and symbol is not always unique and I don't think it's a good idea to work on the more exact ensIDs for the analysis.

Additionally, there are some generalizations and fixes.