fix: remove unused ftp RemoteProvider

snakemake-workflows / rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

MIT License

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fix: remove unused ftp RemoteProvider #76

Closed dlaehnemann closed 7 months ago

dlaehnemann commented 7 months ago

Migration to using snakemake >=v8.0.0 requires switching to use plugins: https://snakemake.readthedocs.io/en/latest/getting_started/migration.html

In the case of remote providers, these are now implemented as storage plugins. Here we switch to the new FTP storage plugin: https://snakemake.github.io/snakemake-plugin-catalog/plugins/storage/ftp.html

I hope that this closes #74 .

dlaehnemann commented 7 months ago

Just to clarify: The workflow doesn't seem to have used the RemoteProvider at all. So all this PR did, was remove its use and set a very recent minimum snakemake version.