fix: use derived input for star_index

snakemake-workflows / rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

MIT License

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fix: use derived input for star_index #81

Closed bilalshaikh42 closed 3 months ago

bilalshaikh42 commented 3 months ago

the file path for the -sjdbGTFfile parameter was hardcoded to 'resources/genome.gtf' which causes execution to fail due to missing files on remote execution environments without a shared filesystem (such as kubernetes)

This derives the filepath correctly from the input property to fix this issue

dlaehnemann commented 3 months ago

Thanks again, @bilalshaikh42. I just fixed the formatting and merged this, it is now released with the version tag v2.1.2, so you can point your module import statement to that to get the fix into your deployment of the workflow.