no profile directory deployed along the workflow - Githubissues

snakemake / snakedeploy

deploy a snakemake pipeline directly from version control (under development)

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no profile directory deployed along the workflow #64

Open cmeesters opened 1 month ago

cmeesters commented 1 month ago

snakedeploy version: 0.10.0
Python version: 3.12.3
Operating System: Alma, kernel 4.18.0 due to lustre compatibility issues with newer kernels.

Description

I deployed my own workflow (snakemake.github.io/snakemake-workflow-catalog/).

What I Did

$ snakedeploy deploy-workflow https://github.com/snakemake-workflows/transcriptome-differential-expression . --tag v1.2.0

The workflow has a profile directory - this is not part of the download and hence not editable.