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snakemake / snakeface

The snakemake interface, currently works like a notebook (under development)
https://snakeface.readthedocs.io/
Mozilla Public License 2.0
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How should the interface handle environment.yaml? #6

Closed vsoch closed 3 years ago

vsoch commented 3 years ago

I'm going through the tutorial, and it requires that I create and install the environment.yaml, e.g., https://snakemake.readthedocs.io/en/stable/tutorial/setup.html#step-3-creating-an-environment-with-the-required-software. But I thought this was handled by the workflow run, when it specifies it? I need to confirm or deny this, and then decide how the environment files should be handled (if at all).

vsoch commented 3 years ago

We don't, it's added as a conda directive in the Snakefile.