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snakemake / snakemake-executor-plugin-googlebatch

Snakemake executor plugin for Google Batch (under development)
MIT License
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feat: add/intel mpi example #20

Closed vsoch closed 6 months ago

vsoch commented 6 months ago

This adds the intel mpi example. The example functionally works, but the actual command does not write the output to file (it is empty). I pinged @johanneskoester about this and likely it needs to be debugged (the workflow is also in core snakemake) but technically speaking the google batch portion of this is working as expected so I think we can PR here. My credits for this project are expiring early January (and I haven't used a ton) so we need to keep moving.

vsoch commented 6 months ago

The output here is not correct (it is empty) but technically speaking the setup is working to run MPI, so I'm going to go ahead and merge. Note that I opened an issue on this and haven't gotten a response, but I need to continue working on other aspects of the tool.