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snakemake / snakemake-executor-plugin-googlebatch

Snakemake executor plugin for Google Batch (under development)
MIT License
3 stars 5 forks source link

fix: make get_snakefile return rel path to snakefile #40

Closed cademirch closed 3 months ago

cademirch commented 3 months ago

Should fix #39.

vsoch commented 3 months ago

@cademirch this isn't your fault:

By default, secrets are not passed to workflows triggered from forks, including Dependabot.

Let me make a fork for you to PR to, we will merge there and then PR with that fork. We probably need to figure out a means for this to work in the future, but right now that PR will be the point where we can evaluate the code isn't being malicious, etc.

vsoch commented 3 months ago

Change the PR to be against this branch:

https://github.com/snakemake/snakemake-executor-plugin-googlebatch/tree/fix-snakefile-path

vsoch commented 3 months ago

oh looks like I can do it!

cademirch commented 3 months ago

Yeah I figured it wasn't me :) thanks!