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snakemake / snakemake-executor-plugin-googlebatch

Snakemake executor plugin for Google Batch (under development)
MIT License
3 stars 5 forks source link

Custom Snippets #42

Open cademirch opened 3 months ago

cademirch commented 3 months ago

I'm back again (...sorry). 😅

Just curious about the custom snippets, which seems awesome. I'd be happy to test/develop - just curious what a custom snippet script might look like?

Fwiw, my use case would be to install dependencies for the Snakefile (i.e pandas). I think pandas used to be installed in the snakemake docker, but now with snakemake installed via pip it seems its not there.

No rush on this - thanks for all the help so far!!

cademirch commented 3 months ago

Oops I'm a bit trigger happy on the issues... I see the example intel-mpi one now.