test: Testing cos again

[cademirch]

Let's try this again :)

Checked out testing-cos locally, made my changes, and created this PR. I think this can be merged into testing-cos which can then be merged into main? Hope I got this right!

[vsoch]

For linting / formatting you should be able to do:

poetry run black <path>
poetry run flake8 <path>

poetry isn't my favorite, but it's used across snakemake so I know only the very basics!

[cademirch]

Looks like the tests are failing cuz the poetry dependencies are out of date, so when this eventually gets merged to main, it should be okay?

[vsoch]

Does it work locally for you? If you can try to fix the bug here that would be ideal - it won’t magically resolve merging into the or branch.

[cademirch]

I'm not sure its a bug - just the dependencies on testing-cos are out of date. I presume when testing-cos was made snakemake-interface-executor-plugins hadn't made it to version 9 yet, but since the snakemake dependency points to the snakemake main branch, it can ask for executor-plugins>9.10, even though that version didn't exist when testing-cos was made. This creates the unresolvable dependency.

Because snakemake (8.10.6) @ git+https://github.com/snakemake/snakemake.git@main depends on snakemake-interface-executor-plugins (>=9.1.0,<10.0)
 and snakemake-executor-plugin-googlebatch depends on snakemake-interface-executor-plugins (^8.1.1), snakemake is forbidden.
So, because snakemake-executor-plugin-googlebatch depends on snakemake (8.10.6) @ git+https://github.com/snakemake/snakemake.git@main, version solving failed.

Since main is ahead of testing-cos, with the correct dependencies, I figured that when testing-cos gets merged into main, the dependency issue will be resolved. If you'd like I can rebase this against main though.

[vsoch]

Try doing the update here.

[cademirch]

Done! Google auth still fails tho