snakemake / snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster
MIT License
18 stars 19 forks source link

chore: update to stable snakemake #142

Closed johanneskoester closed 2 months ago

johanneskoester commented 2 months ago

Summary by CodeRabbit

coderabbitai[bot] commented 2 months ago

Walkthrough

The change involves updating the dependency specification for the snakemake package in the pyproject.toml file. The previous configuration sourced snakemake directly from a Git repository, while the updated configuration specifies that version 8.20.0 should be used. This modification shifts from a direct Git reference to a versioned release.

Changes

Files Change Summary
pyproject.toml Updated snakemake dependency from Git repository to version 8.20.0.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant DependencyManager
    participant GitRepo
    participant PackageRepo

    User->>DependencyManager: Request for snakemake
    alt Old Configuration
        DependencyManager->>GitRepo: Fetch latest commit
        GitRepo-->>DependencyManager: Return latest snakemake
    else New Configuration
        DependencyManager->>PackageRepo: Fetch version 8.20.0
        PackageRepo-->>DependencyManager: Return snakemake 8.20.0
    end
    DependencyManager-->>User: Provide snakemake

Poem

🐇 In the garden where I hop and play,
A change has come to brighten the day!
From Git's wild branches, we now take flight,
With version 8.20.0, everything feels right!
Hooray for stability, let’s dance and cheer,
For a smoother journey throughout the year! 🌼


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cmeesters commented 2 months ago

oh, hm, why is there now an explicit version instead of the URI?

johanneskoester commented 2 months ago

Fix incoming: https://github.com/snakemake/snakemake/pull/3077

johanneskoester commented 2 months ago

The test still failed...

johanneskoester commented 2 months ago

Why the merge already?

johanneskoester commented 2 months ago

The fix is not yet released.

cmeesters commented 2 months ago

Why the merge already?

The change is merely in the toml, pointing to an existing snakemake release.