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snakemake / snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster
MIT License
18 stars 19 forks source link

fix: added forgotten yield in case of job preemption #148

Closed cmeesters closed 2 months ago

cmeesters commented 2 months ago

Summary by CodeRabbit

coderabbitai[bot] commented 2 months ago

Walkthrough

The pull request modifies the check_active_jobs function in the snakemake_executor_plugin_slurm/__init__.py file by adding a line to yield job information when the job status is neither "UNKNOWN" nor other specified states. This change improves the function's control flow, allowing for more effective processing of active jobs.

Changes

Files Change Summary
snakemake_executor_plugin_slurm/__init__.py Added yield j in function check_active_jobs

Poem

🐰 In the meadow where jobs do play,
A new line added brightens the day.
With statuses checked, we hop and we yield,
Active jobs flourish, their fates now revealed.
So let's dance and rejoice, for changes are here,
In the world of Snakemake, we cheer with good cheer! 🎉

Recent review details **Configuration used: .coderabbit.yaml** **Review profile: CHILL**
Commits Files that changed from the base of the PR and between 8adfbf88abec205fb33c5e59a2daec2d6671eeb1 and 61598446d7b55dc34a33c26fda8852823906a8bb.
Files selected for processing (1) * snakemake_executor_plugin_slurm/__init__.py (1 hunks)
Additional comments not posted (1)
snakemake_executor_plugin_slurm/__init__.py (1)
`364-364`: **LGTM!** The change to yield `j` when the job status is neither "UNKNOWN" nor any other specified state is a good addition. It allows the function to provide job information to the caller in more cases, potentially enabling better handling of active jobs.
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