docs: fix headings in further.md

johanneskoester commented 2 weeks ago

Summary by CodeRabbit

Documentation
- Enhanced clarity and usability of the SLURM executor plugin documentation for Snakemake.
- Updated section headers for better hierarchy and organization.
- Expanded instructions for using SLURM, including detailed SMP and MPI job configurations.
- Introduced new sections on advanced resource specifications and additional command line flags.
- Refined the retries section to improve understanding of job failure handling and automatic resubmission.
- Provided examples of YAML configurations for default resources and job settings.
- Concluded with a summary of typical command line usage for Snakemake with SLURM, including syntax corrections and clarifications.

coderabbitai[bot] commented 2 weeks ago

Walkthrough

The pull request involves significant modifications to the documentation for the SLURM executor plugin in Snakemake. Changes include reformatting section headers, expanding content for clarity, and introducing new sections that provide detailed instructions on various aspects of SLURM usage. Key areas enhanced include resource specifications, job configurations, and handling job failures. The document aims to improve usability and understanding for users working with SLURM in Snakemake workflows.

Changes

File Change Summary

docs/further.md - Reformatted section headers from "##" to "###".
- Expanded explanations on SLURM executor usage, including accounts, partitions, and job handling.
- Added examples for defining resources in "Ordinary SMP jobs".
- Clarified "MPI jobs" section with srun usage and configuration examples.
- Introduced "Advanced Resource Specifications" and "Additional Command Line Flags" sections.
- Refined "Retries" section for job failure handling.
- Added YAML configuration examples and a summary of command line usage.

File	Change Summary
docs/further.md	- Reformatted section headers from "##" to "###". - Expanded explanations on SLURM executor usage, including accounts, partitions, and job handling. - Added examples for defining resources in "Ordinary SMP jobs". - Clarified "MPI jobs" section with `srun` usage and configuration examples. - Introduced "Advanced Resource Specifications" and "Additional Command Line Flags" sections. - Refined "Retries" section for job failure handling. - Added YAML configuration examples and a summary of command line usage.

Possibly related PRs

153: The changes in this PR also enhance the documentation for the SLURM executor plugin, specifically addressing the retries section and command line flags, which align with the main PR's focus on improving clarity and usability in the SLURM documentation.

Suggested reviewers

dlaehnemann
johanneskoester

🐰 In the garden of code, I hop with glee,
With clearer paths for all to see.
SLURM's secrets now unfold,
In structured lines, the tales are told.
From threads to flags, we weave the lore,
A joyful guide for users, evermore! 🌼

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cmeesters commented 2 weeks ago

@dlaehnemann may I ask you to exercise the 4 eyes principle?

snakemake / snakemake-executor-plugin-slurm