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snakemake / snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster
MIT License
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The benchmark directive does not work when slurm is used as the executor #55

Closed stefmldk closed 7 months ago

stefmldk commented 8 months ago

Dear developers The benchmark directive, that may be added to a rule, works fine with the default executor. But if slurm is used as the executor (via snakemake-executor-plugin-slurm), it seems that no benchmark files get created. Snakemake version: 8.10.0.

Thank you for all your hard work!

Cheers!

cmeesters commented 8 months ago

Hm, that would affect my next steps directly. I will investigate this early next week (currently, I am on a retreat).

stefmldk commented 7 months ago

Update: It appears that the benchmark directive DOES WORK with slurm. The reason it appeared as if it didn't was that I had used a wrong account that did not have the expected compute resources associated. It was able to complete some jobs, but apparently extracting benchmarking info was prohibited. Changing the account to one with the expected compute resources made the benchmarking info appear. I apologize, but still, this is quite illustrative. Thanks.

cmeesters commented 7 months ago

Thank you for the feedback - I was about to ask for additional information today as the feature works for us just like intended.