refactor: get cpus_per_task from jobstep executor

snakemake / snakemake-executor-plugin-slurm

A Snakemake executor plugin for submitting jobs to a SLURM cluster

MIT License

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Closed johanneskoester closed 7 months ago

cmeesters commented 7 months ago

will re-run after the merge in the jobstepexecutor is settled for a while

cmeesters commented 7 months ago

@johanneskoester na, whilst the import error is fixed after the jobstep executor release, we seemingly run into other issues.

johanneskoester commented 7 months ago

Looking into that. Seems like sbatch requests less cpus than the group needs (1 instead of 2).