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snakemake / snakemake-github-action

A Github action for running a Snakemake workflow
MIT License
53 stars 12 forks source link

Bug: conda is not properly installed with v8.20.6 docker build #38

Open ezherman opened 1 month ago

ezherman commented 1 month ago

I believe I have encountered an issue similar to https://github.com/snakemake/snakemake-github-action/issues/37.

Since the latest Snakemake update to v8.20.6, my github actions is failing with:

Building DAG of jobs...
/usr/bin/bash: line 1: conda: command not found

Setting Snakemake to v8.20.5 through this branch resolves the issue.

durr1602 commented 1 month ago

can you indicate the version of github actions you are using? it works for me with snakemake/snakemake-github-action@v1.25.1