In our cluster environment the job specific tmp directory is accessible through both $MXQ_JOB_TMPDIR and $TMPDIR. The first one doesn't exist in the local context, the second one points to /scratch/local locally.
With
remote-job-local-storage-prefix: $TMPDIR
files are copied to /scratch/local
Retrieving /scratch/local/fs/resources/rnaseq/ENCSR700EBI.fastq from storage.
while with
remote-job-local-storage-prefix: $MXQ_JOB_TMPDIR
files land in the correct location
Retrieving /dev/shm/mxqd/mnt/job/51813391/fs/resources/rnaseq/ENCSR700EBI.fastq from storage.
In our cluster environment the job specific tmp directory is accessible through both
$MXQ_JOB_TMPDIRand$TMPDIR. The first one doesn't exist in the local context, the second one points to/scratch/locallocally. Withfiles are copied to
/scratch/localwhile with
files land in the correct location