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snaketron / ClustIRR

Clustering of immune receptor repertoires
GNU General Public License v3.0
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For global distances allow "interface" to tcrdist3 #1

Closed snaketron closed 1 year ago

snaketron commented 1 year ago

Internally global distances are computed between CDR3 sequences using hamming distance.

Well-known tools, such as tcrdist3, already exist that can compute global distances using more sophisticated. We should at least provide an interface to skip global dist computation and to use the distances estimated by complementary methods.

kaozkai commented 1 year ago

should be achieved via global_pairs