In some of our earlier meetings we talked about the visualization of ClustIRR. This is a summary:
expand_clones parameter is not needed. This makes the algorithm computation/memory-wise more tractable
plot_graph.Rd -> graph.Rd; it is more convenient to name the man files the same as the scripts they describe. In my opinion, we need to work a little bit more on the text in this man page. Novice user should be able to use this page as a reference to interpret all visual symbols (shapes, colors, etc.) they encounter in the output.
If we remove expand_clones we can also simplify the vignette.
In some of our earlier meetings we talked about the visualization of ClustIRR. This is a summary:
expand_clonesparameter is not needed. This makes the algorithm computation/memory-wise more tractableIf we remove
expand_cloneswe can also simplify the vignette.