snandiDS
commented
1 year ago Hi, Thank you for the suggestion. We will update the package.
On Fri, Aug 26, 2022 at 10:15 PM clinte14 @.***> wrote:
Prokseq's manual recommends the following for mounting a local directory in container:
docker run -it -v /home/user/prokseqData:/root/prokseq/ --name PROKSEQ snandids/prokseq-v2.1:v1
However, this mounting overwrites all of the data in the /root/prokseq/ folder, including the scripts folder. The result is that prokseq cannot run.
Perhaps the mount point could /root/prokseq/your_project_name, and the subsequent steps in the manual could be updated to reflect this new path to the data?
Link to above mentioned documentation: https://prokseqv20.readthedocs.io/en/latest/#parameter-file
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Prokseq's manual recommends the following for mounting a local directory in container:
docker run -it -v /home/user/prokseqData:/root/prokseq/ --name PROKSEQ snandids/prokseq-v2.1:v1However, this mounting overwrites all of the data in the /root/prokseq/ folder, including the scripts folder. The result is that prokseq cannot run.
Perhaps the mount point could be made something like /root/prokseq/_your_projectname, and the subsequent steps in the manual could be updated to reflect this new path to the data?
Link to above mentioned documentation: https://prokseqv20.readthedocs.io/en/latest/#parameter-file