To further expand its usability, would you be able to add some R scripts that replicate your analysis of the counts data and generation of plots for both edgeR and DESeq2? This would be extremely useful for people that only have R programming experience (common in academia) as it would allow them to fine tune figures for publication and easily alter the results for experiments with more than 2 groups (i.e. control, treatment_1, treatment_2, etc.) by simply reading in the countFile.csv data and chugging away.
You've done an excellent job on this pipeline.
To further expand its usability, would you be able to add some R scripts that replicate your analysis of the counts data and generation of plots for both edgeR and DESeq2? This would be extremely useful for people that only have R programming experience (common in academia) as it would allow them to fine tune figures for publication and easily alter the results for experiments with more than 2 groups (i.e. control, treatment_1, treatment_2, etc.) by simply reading in the countFile.csv data and chugging away.