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snandiDS / prokseq-v2.0

MIT License
8 stars 7 forks source link

wrapped in one conda environment #7

Open Thexiyang opened 2 years ago

Thexiyang commented 2 years ago

Thanks for the nice tool! It seems to be not that easily to install. Is it possible to wrap all tools in one conda environment?

jacquikeane commented 1 year ago

Yes, this would be really helpful! Making a conda recipe specifying the dependencies would remove the need for editing configs with location of the dependencies and the relevant executables could be copied to the conda bin and and picked up by default when the conda environment is activated.

snandiDS commented 1 year ago

We will try to make a conda recipe. Thanks! However, we recommend Docker ( https://hub.docker.com/repository/docker/snandids/prokseq-v2.0) to overcome such dependency issues.

On Tue, Jul 12, 2022 at 12:08 AM Jacqui Keane @.***> wrote:

Yes, this would be really helpful! Making a conda recipe specifying the dependencies would remove the need for editing configs with location of the dependencies and the relevant executables could be copied to the conda bin and and picked up by default when the conda environment is activated.

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