search

snap-stanford / GEARS

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
MIT License
189 stars 38 forks source link

Issue loading custom data #39

Closed docmab23 closed 3 weeks ago

docmab23 commented 9 months ago

So, I was trying to load some scPerturb data, I transformed the data to have required columns (and more). But I am getting this error:

image

I wasn't getting this error earlier, as even the PyG object generation started earlier, not sure, why I am getting this now.

Any help would be appreciated!

Thanks

yhr91 commented 9 months ago

Thanks for your question and sorry for the late reply. Can you please share the output to adata.obs.head(). There might be an issue with the formatting

What do you mean by 'earlier' - is that before the latest update to the package?

yhr91 commented 3 weeks ago

Closing due to lack of activity