custom GO graph location

snap-stanford / GEARS

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

MIT License

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custom GO graph location #60

Closed Jiahao-Gao closed 2 weeks ago

Jiahao-Gao commented 5 months ago

line212 in utils.py fname under make_GO should use data_path variable, not hardcoded ./data/

yanwuanxin commented 5 months ago

I encountered an error at model_initialize > get_similarity_network > make_GO，after run pert_data = PertData(data_path = outdir, default_pert_graph = False). I made the following modifications, error message did not appear.