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snap-stanford / GEARS

GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
MIT License
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Value error in loading the dataset #75

Open bboyrush117 opened 3 weeks ago

bboyrush117 commented 3 weeks ago

Hi,

Thank you for a great paper. I am trying to run GEARS on the scRNA dataset below, and I am getting the following error message.

Link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217066https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217066. Colab Notebook: https://colab.research.google.com/drive/1dABqk0goiz0rfj6etrOJK-zXfBn

Error:

Screenshot 2024-07-01 at 11 36 35 AM
yhr91 commented 3 weeks ago

Hi, the colab notebook link doesn't seem to be working. From the image you shared it looks like maybe the control condition wasn't set correctly?