search

snap-stanford / UCE

UCE is a zero-shot foundation model for single-cell gene expression data
MIT License
120 stars 15 forks source link

Gene names in IMA dataset #11

Closed zhuizhui-jj closed 6 months ago

zhuizhui-jj commented 6 months ago

Your method is very innovative, and the cell features obtained have wide applications in downstream tasks. We downloaded the data from the IMA dataset through the provided link but noticed that gene names are represented by numbers. Could you please provide a dictionary mapping these numbers to the corresponding gene names?

Yanay1 commented 6 months ago

Thanks!

For the IMA dataset, the .X slot is the UCE embeddings. There are no gene names / expression data in that anndata.