I used our great package to run my own data and found the MARS_labels are very different from my own cluster IDs. The result is the following:
Can you tell me whether it means my clustering is not very good and can not group every cell type very well? Thanks!
Also, I checked our two example notebooks and found you always split the data into annotated and unannotated. Is there any way we don't have to do so? As we mainly focus on this cluster no matter what kind of conditions or tissues.
Hi MARS team,
I used our great package to run my own data and found the MARS_labels are very different from my own cluster IDs. The result is the following:
Can you tell me whether it means my clustering is not very good and can not group every cell type very well? Thanks!
Also, I checked our two example notebooks and found you always split the data into annotated and unannotated. Is there any way we don't have to do so? As we mainly focus on this cluster no matter what kind of conditions or tissues.
Thanks, Yale