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snap-stanford / mars

Discovering novel cell types across heterogenous single-cell experiments
MIT License
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How to visualize the " MARS_embeddings" and how to define the 'cell_type_name_map'? #9

Closed Yale73 closed 3 years ago

Yale73 commented 3 years ago

Hi MARS team,

Sorry to bother you again.

Can you tell me how to visualize the " MARS_embeddings" ?

Also, when I run the "mars.name_cell_types(adata, landmarks, cell_type_name_map)", I got error: NameError: name 'cell_type_name_map' is not defined. Can you tell me how to define the 'cell_type_name_map'?

Sorry that I have no background on python, but I really like our package.

Thanks for your patience,

Thanks again, Yale