snap-stanford pretrain-gnns issues

snap-stanford / pretrain-gnns

Strategies for Pre-training Graph Neural Networks

MIT License

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Generate the embedding based on pretraining model

#71 Nokeli opened 2 months ago
0
ValueError: `MessagePassing.propagate` only supports `torch.LongTensor` of shape `[2, num_messages]` or `torch_sparse.SparseTensor` for argument `edge_index`.

#70 vrjmath opened 2 months ago
0
Question about the supervised training.

#69 StefanIsSmart opened 5 months ago
0
ModuleNotFoundError: No module named 'pandas.core.indexes.numeric'

#68 hxu105 opened 5 months ago
0
RuntimeError: The 'data' object was created by an older version of PyG. If this error occurred while loading an already existing dataset, remove the 'processed/' directory in the dataset's root folder and try again.

#67 GreatnessBrain opened 10 months ago
3
Add separate embeddings method

#66 jlinnett-montai closed 1 year ago
0
Make package 2023 06 22

#65 jay-bhambhani closed 1 year ago
0
Make package 2023 06 22

#64 jay-bhambhani closed 1 year ago
0
Make package 2023 06 22

#63 jay-bhambhani closed 1 year ago
0
Saved model test 2023 06 21

#62 jay-bhambhani closed 1 year ago
0
not incompatiable with new pyg version

#61 yanhlai4bio opened 1 year ago
0
bio has not processing function

#60 gao8507 opened 1 year ago
0
RuntimeError: The 'data' object was created by an older version of PyG. If this error occurred while loading an already existing dataset, remove the 'processed/' directory in the dataset's root folder and try again.

#59 zwangeo closed 1 year ago
1
NotImplementedError

#58 huyue132 opened 1 year ago
0
Questions about model size

#57 HelloWorldLTY opened 1 year ago
0
Fine-tuning on a new dataset.

#56 SejeongPark8354 closed 2 years ago
2
Issues with pre-training on new dataset and dataloading

#55 engmubarak48 opened 2 years ago
4
Pretrain using a new dataset

#54 kdmsit opened 2 years ago
2
a question about calculating the loss in pretrainning

#53 huzongxiang closed 2 years ago
0
Why i can not download data

#52 Lirain21 opened 2 years ago
3
Implementation error of Jumping Knowledge

#51 linfeng-du opened 2 years ago
0
Sharing GNN models through the Hugging Face Hub

#50 omarespejel opened 2 years ago
0
Implementation error of GATConv

#49 linfeng-du opened 2 years ago
0
Implementation error of GAT (?)

#48 linfeng-du closed 2 years ago
1
Why didn't we use random scaffold split?

#47 lvkd84 opened 2 years ago
1
Question about the environment

#46 funihang closed 2 years ago
0
Could you share the entire package list? Thanks!

#45 yuzhenmao closed 3 years ago
1
Adding requirements and correcting url with ssl

#44 monk1337 closed 1 year ago
0
can u give a description of the bio data?

#43 psp3dcg opened 3 years ago
0
Added analysis for out-of-RAM analysis

#42 LanceKnight closed 3 years ago
1
About prediction method

#41 P260 opened 3 years ago
1
Shape mismatch error when switching the model to GAT

#40 Yujun-Yan opened 3 years ago
3
function '_load_pcba_dataset' not defined in the file chem/loader.py

#39 Yujun-Yan opened 3 years ago
1
Question about the eval function

#38 whtitefall opened 3 years ago
1
NB Abbreviation in doc-strings

#37 hansen7 closed 3 years ago
1
Question about code of supervised pre-training on Chem dataset

#36 hyp1231 closed 3 years ago
2
Questions on sensitivity of results to package versions

#35 sungsoo-ahn closed 3 years ago
2
Validation on different dataset

#34 P260 opened 3 years ago
3
Questions about reproducing experimental results

#33 zaixizhang closed 3 years ago
1
An RuntimeError:There were no tensor arguments to this function

#32 gr986 opened 3 years ago
3
Question about evaluating results

#31 P260 opened 3 years ago
2
Edge attributes for BIO dataset

#30 mdanb opened 3 years ago
1
Prior set

#29 mdanb closed 3 years ago
0
Dependency issues

#28 msaebi1993 opened 3 years ago
2
Question about negative context representation in context prediction

#27 lvguofeng1303 opened 3 years ago
1
Code question

#26 wangzeyu135798 opened 3 years ago
6
Question about the regression tasks

#25 tytcc opened 3 years ago
1
Context prediction pre-training loss weighting

#24 agamemnonc closed 3 years ago
1
Docker for running code?

#23 cyrusmaher closed 3 years ago
3
Question about OGB submission

#22 agamemnonc closed 4 years ago
2