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snayfach / MAGpurify

Improvement of metagenome-assembled genomes
GNU General Public License v3.0
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Issue with building my reference database for conspecific module #22

Open djung0928 opened 1 year ago

djung0928 commented 1 year ago

Hello,

I have been trying to build my own reference database for the conspecific module using the command lines from the manual but I keep failing.

The error message that I got was:

...tching "/lustre04/scratch/djung09/MAGpurify/magpurify/MAGpurify-db-v1.0/wvu007.fna" for reading.not open "/lustre04/scratch/djung09/MAGpurify/magpurify/MAGpurify-db-v1.0/wvu007.fna"

So I tried with the example genome files but it still fails: Sketching example/ref_genomes/ERS473214_89.fna... ERROR: could not open example/ref_genomes/ERS473214_89.fna for reading.

I have been using Compute Canada cloud and both mash and MAGpurify are installed and work fine. Could you help fix this problem? Thanks!