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snayfach / MAGpurify

Improvement of metagenome-assembled genomes
GNU General Public License v3.0
47 stars 12 forks source link

too many bam files #24

Open dmneedha opened 1 year ago

dmneedha commented 1 year ago

Hi!

Cool software, thanks!

Any suggestions for how to run the coverage module with, for example, over 15,000 bam files? I get the following message

OSError: [Errno 7] Argument list too long: '/bin/sh'

Best, David