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UHGV
Unified Human Gut Virome Catalog
https://portal.nersc.gov/UHGV
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Taxonomy
#5
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snayfach
closed
1 year ago
snayfach
commented
1 year ago
[x] get curated taxonomy of references
[x] identify <5% FDR cutoffs for rank-specific taxonomic annotation
[x] get nearest-reference-based taxonomic annotation
[x] get detailed alignment info (genes shared, etc.)
[x] drop old table with cluster based taxonomy
[x] create taxonomy table that integrates genomad and inphared
[x] create "Taxon" field
[x] add "Taxon" field to master table
[x] accession="phage_2": nothing I can do, this is how the identifiers were formatted originally
[x] contig_to_reference.lineage: "root;Heunggongvirae" to "root;Duplodnaviria;Heunggongvirae"
[x] include otu_to_ictv_taxonomy in master query