Pathobionts - Githubissues

snayfach / UHGV

Unified Human Gut Virome Catalog

https://portal.nersc.gov/UHGV

Other

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Pathobionts #50

Closed snayfach closed 1 year ago

snayfach commented 1 year ago

Porphyromonas gingivalis (periodontitis)

https://www.biorxiv.org/content/10.1101/2022.12.30.519816v1.full.pdf

Fusobacterium nucleatum (CRC)

Klebsiella pneumonia (IBD)

https://pubmed.ncbi.nlm.nih.gov/35931020/

“Shiga toxin-producing” E. coli

Clostridioides difficile (IBD)

Bacteroides fragilis ETBF-producers (CRC)

https://www.frontiersin.org/articles/10.3389/fcimb.2019.00449/full

Others

Enterococcus gallinarum
Enterococcus faecalis

Use GWAS databases to identify species

https://academic.oup.com/nar/article/50/D1/D777/6426060