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snayfach / UHGV

Unified Human Gut Virome Catalog
https://portal.nersc.gov/UHGV
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viral_cluster_info.tsv and genome_taxonomy.tsv in uhgv-db-v0.4 #71

Open ChaoXianSen opened 7 months ago

ChaoXianSen commented 7 months ago

Hi,

  1. I check "genome_taxonomy.tsv" in uhgv-db-v0.4 is 57514 lines .(57514 is the number of high-quality, species level representatives): image"

The column behind the species_vc is also high quality ? Is it equivalent to species_vc ?

  1. using ughv-tools to classify user genome, output file taxon_info.tsv : image

if "vOTU-108060" ,"vGENUS-23929" not include in genome_taxonomy.tsv, although this genome has been annotated, can I assume that there is no intersection with hq_votu of uhgv ?