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sneumann / SemanticMetabolomics

A collection of converters and examples to show how Metabolomics can be a good citizen in Linked-Open-Data
GNU General Public License v3.0
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Mapping of MassBank instruments to psi-ms.obo #2

Open sneumann opened 10 years ago

sneumann commented 10 years ago

We need a mapping from the AC$INSTRUMENT to psi-ms.obo instrument models. Start with the most frequent ones first, ask if uncertain. Yours, Steffen

   find /vol/massbank/OpenData-old -name "*.txt" | xargs grep  INSTRUMENT: | cut -d: -f 3- | sort | uniq -c | sort -n 

  1  Agilent 7000B QqQMS, Agilent; Agilent 7906A series GC system, Agilent Technologies
  1  Agilent 7000B QqQMS, Agilent; Agilent 7907A series GC system, Agilent Technologies
  1  Agilent 7000B QqQMS, Agilent; Agilent 7908A series GC system, Agilent Technologies
  1  HITACHI M-86
  1  HITACHI RMU
  1  HITACHI RMU-S
  1  JE0L
  1  JEOL JMS
  1  JEOL JMS-DI-300
  [...]
 1371  UPLC Q-Tof Premier, Waters
 1443  HITACHI M-80
 1467  HITACHI M-80B
 2121  LC-10ADVPmicro HPLC, Shimadzu; LTQ Orbitrap, Thermo Scientific
 2626  Agilent 1200 RRLC; Agilent 6520 QTOF
 4265  API3000, Applied Biosystems