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sneumann / mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
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Debian issue after upgrade to Buster #201

Closed rromoli closed 4 years ago

rromoli commented 4 years ago

HI, I get several issue after I upgrade my workstation to Debian 10.

> library(mzR)
Loading required package: Rcpp
Error: package or namespace load failed for ‘mzR’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/usr/local/lib/R/site-library/ncdf4/libs/ncdf4.so':
  libnetcdf.so.11: cannot open shared object file: No such file or directory

If I try to load other related package such as xcms, but I get the same error. I see that Debian 10 run libnecdf13 so I think the problem is related.

What should I do?

jorainer commented 4 years ago

Try re-installing the ncdf package: BiocManager::install("ncdf4").

rromoli commented 4 years ago

Thanks, I solved reinstalling ncdf4 from within R and reinstalling libnetcdf-dev from linux term. Thanks