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sneumann / mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
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Build error macOS + Linux #208

Closed sneumann closed 4 years ago

sneumann commented 4 years ago

Hi, we have a build error on macOS + Linux: https://master.bioconductor.org/checkResults/3.10/bioc-LATEST/mzR/malbec1-install.html

...
g++: error: "/home/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/lib/libhdf5_cpp.a": No such file or directory
g++: error: "/home/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/lib/libhdf5.a": No such file or directory
g++: error: "/home/biocbuild/bbs-3.10-bioc/R/library/Rhdf5lib/lib/libsz.a": No such file or directory
/home/biocbuild/bbs-3.10-bioc/R/share/make/shlib.mk:6: recipe for target 'mzR.so' failed

Although Rhdf5lib is fine: http://bioconductor.org/checkResults/3.10/bioc-LATEST/Rhdf5lib/ Let's see if that persists. Yours, Steffen

sneumann commented 4 years ago

Cool, fixed already by @grimbough in https://github.com/sneumann/mzR/pull/209. Thanks, Steffen